PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00053.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 230aa    MW: 26104.8 Da    PI: 10.1695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00053.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.2e-10853248
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             g W   Ede+l+    ++G ++W +I++    ++++kqck rw+ +l
  Rsa1.0_00053.1_g00015.1  8 GVWKNTEDEILKASMMKYGRNQWGRISSLAV-RKSAKQCKARWNEWL 53
                             78*****************************.************986 PP

2Myb_DNA-binding37.27e-1260103248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                WT eEde+l+++ k l++  W+tIa  +g  Rt+ qc +r+ k+l
  Rsa1.0_00053.1_g00015.1  60 TEWTVEEDEKLLHLAKILPTQ-WRTIAPAVG--RTPSQCLERYEKLL 103
                              68*****************99.********8..**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.787153IPR017930Myb domain
SMARTSM007177.9E-11655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-17961IPR009057Homeodomain-like
PfamPF139213.7E-121070No hitNo description
CDDcd001671.33E-81053No hitNo description
SuperFamilySSF466891.72E-2033105IPR009057Homeodomain-like
PROSITE profilePS5129420.77354107IPR017930Myb domain
CDDcd116592.01E-3055106No hitNo description
SMARTSM007171.6E-1258105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-1462104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MRGMVKGGVW KNTEDEILKA SMMKYGRNQW GRISSLAVRK SAKQCKARWN EWLDPSIKKT  60
EWTVEEDEKL LHLAKILPTQ WRTIAPAVGR TPSQCLERYE KLLDAACGKG YEAGGDPRKL  120
GPGEIDPNPE SKPARPDAVD MEDYEMEMLS EARARFANTR GKKAKRRARE KQIQEARSLA  180
SLQKRRELRA AGIDDGKHRN KSKGKGIDYG AEIPFEKRAP AGFYDTADER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jb9_W1e-9142243236Pre-mRNA-splicing factor cdc5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674136.11e-150PREDICTED: cell division cycle 5-like protein
SwissprotP929481e-125CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A078IAN91e-146A0A078IAN9_BRANA; BnaC09g14760D protein
STRINGBra027160.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16532913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-124cell division cycle 5